Resolution:
When applying AMX patches in SF managed environment, this is the error message that gets printed in engine log file: “INFO: [ProcessWrapper] [STDOUT] Bundled JRE is not binary compatible with host OS/Arch or it is corrupt.  Testing bundled JRE failed”. Because of this message, the patch does not get applied successfully.

To resolve this issue, add JAVA_HOME runtime context variable on the problematic component (using component configuration wizard) and point it to the location of jre that is shipped with the version of Java that is installed on the machine where the engine is running and/or the engine instance on which the component will be allocated.